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Research Interests: Indexing and Data Mining in Biological Databases, Protein Sequence and Structure, Similarity Search, Protein Structure Modeling, Protein-Protein Interaction, Automated Cell Tracking
Software Development: The Software page lists some of the software I have developed.
Smolign: A Spatial Motifs Based Multiple Protein Structures Alignment Method. Sun, H., Sacan, A., Ferhatosmanoglu, H., & Wang, Y. (2011). IEEE/ACM Transactions on Computational Biology and Bioinformatics. [ bib] Comparing the Yeast Retrograde Response and {NF-kB} Stress Responses. Srinivasan, V., Kriete, A., Sacan, A., & Jazwinski, M. S. (2010). Aging Cell, 9(6), 933-941. [ bib] Comparison of Multidimensional Data Access Methods For Feature-based Image Retrieval. Arslan, S., Açar, E., Sacan, A., Toroslu, H. İ., & Yazıcı, A. (2010). Proceedings of the 20th International Conference on Pattern Recognition (ICPR), Istanbul, Turkey. [ bib] Computer and Information Science: Proceedings of the 25th International Symposium on Computer and Information Sciences, Lecture Notes in Electrical Engineering. Gelenbe, E., Lent, R., Sakellari, G., Sacan, A., Toroslu, H., & Yazici, A. (Eds.). (2010). (Vol. 62). Heidelberg: Springer. [ bib] Proceedings of the 24th International Symposium on Computer and Information Sciences. Vural, F. Y., Yazici, A., Toroslu, H., Can, T., Senkul, P., & Sacan, A. (Eds.). (2009). IEEE Computer Society. [ bib] Prediction of Cysteine Bridges using Sequence Alignments. Sacan, A. (2008). Middle East Technical University, Department of Computer Engineering. [ bib] Similarity Search and Analysis of Protein Sequences and Structures: A Residue Contacts Based Approach. Sacan, A. (2008). PhD Thesis , Middle East Technical University, Turkey. [ bib] Smolign: A Spatial Motifs Based Multiple Protein Structures Alignment Method. Sun, H., Sacan, A., Ferhatosmanoglu, H., & Wang, Y. (2008). Ohio Collaborative Conference on Bioinformatics (OCCBIO), Toledo, OH. [ bib]
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