====== Microarray Analysis
{{wcached>baseid=.:wcached:ma:}}
* Reading:
	* Zvelebil Chapter 15.1, 16 (optional)
	* [[wp>DNA_microarray]]
	* [[https://www.youtube.com/watch?v=VNsThMNjKhM|Watch Animation]]
	* {{wcached>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2435252/pdf/nihms-48908.pdf|Analysis of microarray experiments of gene expression profiling}}

* Lecture Notes: {{ma.pdf}}

* GEO Demo: {{geo_demo.mlx}}, {{geo_demo.pdf}}, (bmes_downloadandparsegpl.m and bmes_downloadandparsegse.m available in bmes.ahmet Dropbox folder)
* GEO Demo: {{geo_demo.ipynb}}

<!--	* {{sam.pptx|SAM tutorial by Rehman Qureshi}}
	* [[hw8|Homework 8]] due Friday Feb 25, before class. -->


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* {{wcached>http://www1.cs.columbia.edu/~cleslie/cs4761/golub.pdf|Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring}}
* [[http://www.ncbi.nlm.nih.gov/books/NBK6624/|Microarrays for Cancer Diagnosis and Classification]]
*  {{wcached>http://web.cs.gc.cuny.edu/~msong/87100/literature/marray-intro1.pdf|Genomics, gene expression and DNA arrays}}
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