====== Introduction to Programming in Matlab
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* The optional readings are from [[https://www.amazon.com/Matlab-Practical-Introduction-Programming-Problem/dp/0124058760|Matlab: A Practical Introduction to Programming and Problem Solving]] by Stormy Attaway.


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* **Week 9:** Advanced Plotting
	* Reading: Chapter10, Chapter11.
	* Lecture Notes: {{10.advancedfunctions.pdf}}, {{11.advancedplotting.pdf}}, {{bmed>lecture 09.exercises}}, [[yt>-jYdD8d1_5s|exercises]], [[yt>3lT4UBREwzw|drugsimulate]]
	* Recorded Lectures: {{bmed>lecture advancedplotting}}, 
	* Sample Code: {{bmed>mfiles 09.exercises}}, {{bmed>mfiles 09}} 


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* **Week 10:** GUI, Data Analysis, Advanced Topics 
  * {{course:bmeprog:07.regexp.pdf}}, 
  * GUI: {{course:bmeprog:10.gui.pdf}} {{bmed>lecture gui}}
	* Publishing: {{course:bmeprog:02.publishing.pdf}} [[yt>C4xWUaHA8Z4]]
	* Recorded lecture for pdb gui: {{bmed>lecture pdbguiprimer*}}

* **Week 10:** Review for Final
	* **Final exam in class, on Thursday June4th 6-9pm**
	* Reading: [[http://www.translational-medicine.com/content/pdf/1479-5876-9-195.pdf|MicroRNA modulation in CRPS]]
	* **Files needed for the final**: {{final.20111:crps.final.zip|crps data files}}, {{bmed>mfiles 11}}


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* **Week 11:** Advanced Topics (curve fitting, function optimization, mupad, GUI development)
	* Recorded Lectures: {{bmed>lecture 11.*}}
	* Sample Code: {{bmed>mfiles 11}}
	* **In-class Final Exam: Thursday Dec 1st, 4-6pm** 
		* [[https://biomed.drexel.goaefis.net|Course Evaluations]] 
		* {{course:bmeprog:07.regexp.hw.wordfreqdata:adventure1.txt}}
		* Please use the file I sent you via email instead. <del>{{course:bmeprog:crps.final.zip}}</del>
		* {{http://www.jneurosci.org/content/19/1/40.full.pdf|A Mathematical Model for the Intracellular Circadian Rhythm Generator}}, {{http://mechanism.ucsd.edu/teaching/F11/philbiology2011/smolen.circadianrhythmmodels.2009.pdf|Circadian Rhythm Models}}

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